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Seminar - "Characterisation of the protein-facilitated ion-transfer mechanism at a polarised aqueous-organic interface" by Dr. Mahreen Arooj

M7-221, Meeting 1 MAR 20201 PM


Characterization of Protein-Facilitated Ion-Transfer Mechanism at a

Polarized Aqueous/Organic Interface using Molecular Dynamics Simulations

Dr. Mahreen Arooj

Department of Chemistry, College of Sciences

University of Sharjah

 

Protein electrochemistry studies at a polarized interface between two immiscible electrolyte solutions (ITIES) indicate that the detection mechanism of a protein at the interface involves a combination of protein−anion complexation and interfacial adsorption processes. A detailed characterization of the protein-facilitated mechanism of ion transfer at the ITIES will allow the development of new label-free biomolecular detection tools. Molecular dynamics simulations were performed to describe the mechanism of transfer of the hydrophobic anion tetraphenylborate (TPB) from a 1,2-dichloroethane (organic) phase to an aqueous phase mediated by lysozyme as a model protein under the action of an external electric field. The anion migrated to the protein at the interface and formed multiple contacts. The side chains of positively charged Lys and Arg residues formed electrostatic interactions with the anion. Nonpolar residues like Trp, Met, and Val formed hydrophobic contacts with the anion as it moved along the protein surface. During this process, lysozyme adopted multiple, partially unfolded conformations at the interface, all involving various anion−protein complexes with small free-energy barriers between them. The general mechanism of protein-facilitated ion transfer at a polarized liquid−liquid interface thus likely involves the movement of a hydrophobic anion along the protein surface through a combination of electrostatic and hydrophobic interactions.




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